Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T45_02630Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family. (515 aa)    
Predicted Functional Partners:
apu
Amylopullulanase precursor.
 
 
   0.952
T45_02628
Alginate lyase.
 
     0.911
T45_03120
Hypothetical protein.
 
 
  0.903
pelA_2
Pectate trisaccharide-lyase precursor.
 
  
 0.802
T45_05148
Hypothetical protein.
  
  
  0.791
T45_02321
Hypothetical protein.
  
 
 0.767
T45_08246
Alginate lyase.
 
     0.760
T45_02923
Alginate lyase.
 
     0.757
lacG_1
Lactose transport system permease protein LacG.
       0.754
lacF_6
Lactose transport system permease protein LacF.
       0.754
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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