Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xynB_1Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family. (576 aa)    
Predicted Functional Partners:
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.726
xyoA
Putative xylitol oxidase.
   
 
  0.582
T45_05443
L-gulono-1,4-lactone dehydrogenase.
   
 
  0.582
xynAS9_4
Endo-1,4-beta-xylanase A precursor.
 
 
 0.558
lacZ_4
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.539
T45_02630
Glycosyl hydrolases family 28; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.529
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
 0.516
ccpA_3
Catabolite control protein A.
       0.507
T45_02613
Extracellular; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.491
lacZ_2
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.485
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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