Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
garA_1Glycogen accumulation regulator GarA. (195 aa)    
Predicted Functional Partners:
yrrB
TPR repeat-containing protein YrrB.
  
 0.897
kgd
Multifunctional 2-oxoglutarate metabolism enzyme.
    
 
 0.886
barA_2
Signal transduction histidine-protein kinase.
  
 
 0.863
pknB_2
Serine/threonine-protein kinase PknB.
 
 
 
 0.846
pknB_1
Serine/threonine-protein kinase PknB.
 
 
 
 0.845
pknB_3
Serine/threonine-protein kinase PknB.
 
 
 
 0.840
T45_09072
Sensory histidine kinase AtoS.
 
 
 0.834
spk1
Serine/threonine-protein kinase PK-1.
 
 
 
 0.832
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.792
treZ
Malto-oligosyltrehalose trehalohydrolase.
       0.754
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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