Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yvhJ_1Putative transcriptional regulator YvhJ. (502 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.705
yvhJ_3
Putative transcriptional regulator YvhJ.
 
  
0.647
brpA
Biofilm regulatory protein A precursor.
 
  
0.608
tatA
Twin arginine translocase protein A; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.585
T45_02710
Peptidase family S51; Belongs to the peptidase S51 family.
       0.546
lgrD_2
Linear gramicidin synthase subunit D.
   
 
 0.506
lgrB
Linear gramicidin synthase subunit B.
     
 0.443
txtB
Thaxtomin synthase B.
     
 0.443
txtA
Thaxtomin synthase A.
     
 0.443
pksJ
Polyketide synthase PksJ.
     
  0.441
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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