cpg2_1 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cpg2_1

Carboxypeptidase G2 precursor. (384 aa)

Predicted Functional Partners:

T45_01767

0.740

argG

0.629

T45_09038

0.624

argC

0.608

T45_02731

0.605

ureA_2

0.589

pyrD

0.509

argB

0.499

narB_2

0.463

aceB

0.457

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_01767	T45_09038	T45_01767	T45_09038	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Putative FAD-linked oxidoreductase.	0.876
T45_01767	aceB	T45_01767	T45_04707	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Malate synthase; Belongs to the malate synthase family.	0.780
T45_01767	argB	T45_01767	T45_03307	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	0.458
T45_01767	argG	T45_01767	T45_03298	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.517
T45_01767	cpg2_1	T45_01767	T45_02732	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Carboxypeptidase G2 precursor.	0.740
T45_01767	narB_2	T45_01767	T45_05524	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.884
T45_01767	pyrD	T45_01767	T45_08437	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Dihydroorotate dehydrogenase (quinone.	0.700
T45_02731	cpg2_1	T45_02731	T45_02732	Hypothetical protein.	Carboxypeptidase G2 precursor.	0.605
T45_09038	T45_01767	T45_09038	T45_01767	Putative FAD-linked oxidoreductase.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.876
T45_09038	aceB	T45_09038	T45_04707	Putative FAD-linked oxidoreductase.	Malate synthase; Belongs to the malate synthase family.	0.859
T45_09038	cpg2_1	T45_09038	T45_02732	Putative FAD-linked oxidoreductase.	Carboxypeptidase G2 precursor.	0.624
T45_09038	narB_2	T45_09038	T45_05524	Putative FAD-linked oxidoreductase.	Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.835
aceB	T45_01767	T45_04707	T45_01767	Malate synthase; Belongs to the malate synthase family.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.780
aceB	T45_09038	T45_04707	T45_09038	Malate synthase; Belongs to the malate synthase family.	Putative FAD-linked oxidoreductase.	0.859
aceB	cpg2_1	T45_04707	T45_02732	Malate synthase; Belongs to the malate synthase family.	Carboxypeptidase G2 precursor.	0.457
aceB	narB_2	T45_04707	T45_05524	Malate synthase; Belongs to the malate synthase family.	Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.543
argB	T45_01767	T45_03307	T45_01767	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.458
argB	argC	T45_03307	T45_03309	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.	0.999
argB	argG	T45_03307	T45_03298	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.978
argB	cpg2_1	T45_03307	T45_02732	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.	Carboxypeptidase G2 precursor.	0.499