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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynT_2Carbonic anhydrase 1; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (196 aa)    
Predicted Functional Partners:
dauA_1
C4-dicarboxylic acid transporter DauA.
 
 0.984
cynT_1
Carbonic anhydrase 1.
 
 
0.923
mtcA2
Carbonic anhydrase 2.
  
  
 
0.921
mtcA1_1
Beta-carbonic anhydrase 1.
    
 0.873
mtcA1_2
Beta-carbonic anhydrase 1.
    
 0.873
dapH
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase.
    
 0.857
T45_02652
Putative acyl transferase.
  
 0.790
tycC_1
Tyrocidine synthase 3.
  
 0.790
dauA_2
C4-dicarboxylic acid transporter DauA.
 
 
 0.780
T45_02745
Hypothetical protein.
       0.778
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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