Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lacF_8Lactose transport system permease protein LacF. (324 aa)    
Predicted Functional Partners:
araQ_8
L-arabinose transport system permease protein.
 
 0.996
msmE_5
Multiple sugar-binding protein precursor.
 
  0.996
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.986
ycjP_4
Inner membrane ABC transporter permease protein.
 
 0.970
araQ_3
L-arabinose transport system permease protein.
 
 0.960
sugB_5
Trehalose transport system permease protein.
 
 0.958
lacG_4
Lactose transport system permease protein LacG.
 
 0.956
sugB_6
Trehalose transport system permease protein.
 
 0.940
araQ_5
L-arabinose transport system permease protein.
 
 0.925
araQ_16
L-arabinose transport system permease protein.
 
 0.919
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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