Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
xylG_3Xylose import ATP-binding protein XylG. (263 aa)    
Predicted Functional Partners:
xylH_3
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
xylH_2
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.948
xylF_3
D-xylose-binding periplasmic protein precursor.
 
 
 0.941
lacF_9
Lactose transport system permease protein LacF.
    
  0.929
xylF_2
D-xylose-binding periplasmic protein precursor.
 
 
 0.901
xylF_4
D-xylose-binding periplasmic protein precursor.
 
 
 0.899
xylF_1
D-xylose-binding periplasmic protein precursor.
 
 
 0.887
rbsC_1
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.834
rbsC_7
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 0.829
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.826
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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