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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_02826Proline racemase; Belongs to the proline racemase family. (333 aa)    
Predicted Functional Partners:
rapL_2
L-lysine cyclodeaminase.
 
  
 0.967
hcnA
Hydrogen cyanide synthase subunit HcnA.
 
  
  0.960
hcnC_1
Hydrogen cyanide synthase subunit HcnC precursor.
 
  
 0.957
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.957
dapA_1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
   
 0.954
hcnB
Hydrogen cyanide synthase subunit HcnB.
 
  
  0.950
fadM_2
Proline dehydrogenase 1.
    
 0.906
T45_05634
D-amino acid dehydrogenase small subunit.
    
 0.898
pip_3
Proline iminopeptidase; Belongs to the peptidase S33 family.
     
 0.892
rapL_1
L-lysine cyclodeaminase.
 
  
 0.892
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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