Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
desVIdTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose. (324 aa)    
Predicted Functional Partners:
bacD_1
Alanine-anticapsin ligase BacD.
 
     0.932
T45_02900
Hypothetical protein.
 
     0.925
mdtH_1
Multidrug resistance protein MdtH.
 
     0.920
dppA_2
Periplasmic dipeptide transport protein.
 
     0.886
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.851
T45_02898
L-Ala-D/L-Glu epimerase.
 
     0.827
sbnA_2
Putative siderophore biosynthesis protein SbnA.
 
     0.825
cmdD_1
Chondramide synthase cmdD.
    
 0.805
gsiC_5
Glutathione transport system permease protein.
 
     0.790
txtB
Thaxtomin synthase B.
    
 0.786
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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