STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bacD_1Alanine-anticapsin ligase BacD. (419 aa)    
Predicted Functional Partners:
accA
Acetyl-coenzyme A carboxylase carboxyl.
  
 0.994
T45_02900
Hypothetical protein.
 
     0.967
mdtH_1
Multidrug resistance protein MdtH.
 
     0.942
sbnA_2
Putative siderophore biosynthesis protein SbnA.
 
  0.938
desVI
dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose.
 
     0.937
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
 0.929
ribD2_2
2,5-diamino-6-ribosylamino-4(3H-pyrimidinone.
   
   0.923
T45_02898
L-Ala-D/L-Glu epimerase.
 
     0.898
gltB_1
Glutamate synthase [NADPH] large chain.
   
 
 0.867
pks2
Phthioceranic/hydroxyphthioceranic acid.
  
 
 0.863
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.