STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hsaCIron-dependent extradiol dioxygenase. (290 aa)    
Predicted Functional Partners:
hsaD
4,5:9,10-diseco-3-hydroxy-5,9.
 
  
  0.878
mutB_2
methylmalonyl-CoA mutase large subunit.
    
 0.823
ksdD_1
3-oxosteroid 1-dehydrogenase.
  
   0.804
ksdD_2
3-oxosteroid 1-dehydrogenase.
  
   0.804
kstD
3-oxosteroid 1-dehydrogenase.
  
   0.796
hsaA_1
Flavin-dependent monooxygenase, oxygenase subunit.
  
    0.766
T45_01408
Lipid-transfer protein.
  
    0.737
T45_01406
Hypothetical protein.
  
     0.733
catJ
3-oxoadipate CoA-transferase subunit B.
 
     0.728
mmgC_14
acyl-CoA dehydrogenase.
  
    0.727
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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