Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T45_00743 | T45_02996 | T45_00743 | T45_02996 | Hypothetical protein. | cysteinyl-tRNA synthetase. | 0.691 |
T45_00743 | T45_07181 | T45_00743 | T45_07181 | Hypothetical protein. | Hypothetical protein. | 0.721 |
T45_00743 | cwsA | T45_00743 | T45_04380 | Hypothetical protein. | Cell wall synthesis protein CwsA. | 0.545 |
T45_02996 | T45_00743 | T45_02996 | T45_00743 | cysteinyl-tRNA synthetase. | Hypothetical protein. | 0.691 |
T45_02996 | T45_02997 | T45_02996 | T45_02997 | cysteinyl-tRNA synthetase. | Histidine phosphatase superfamily. | 0.884 |
T45_02996 | T45_03341 | T45_02996 | T45_03341 | cysteinyl-tRNA synthetase. | Hypothetical protein. | 0.746 |
T45_02996 | T45_03929 | T45_02996 | T45_03929 | cysteinyl-tRNA synthetase. | YacP-like NYN domain protein. | 0.779 |
T45_02996 | T45_07181 | T45_02996 | T45_07181 | cysteinyl-tRNA synthetase. | Hypothetical protein. | 0.742 |
T45_02996 | cwsA | T45_02996 | T45_04380 | cysteinyl-tRNA synthetase. | Cell wall synthesis protein CwsA. | 0.686 |
T45_02996 | leuS | T45_02996 | T45_00549 | cysteinyl-tRNA synthetase. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.693 |
T45_02996 | metH | T45_02996 | T45_03400 | cysteinyl-tRNA synthetase. | Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.839 |
T45_02996 | serB | T45_02996 | T45_07949 | cysteinyl-tRNA synthetase. | Phosphoserine phosphatase. | 0.792 |
T45_02996 | surA | T45_02996 | T45_02503 | cysteinyl-tRNA synthetase. | Chaperone SurA. | 0.763 |
T45_02997 | T45_02996 | T45_02997 | T45_02996 | Histidine phosphatase superfamily. | cysteinyl-tRNA synthetase. | 0.884 |
T45_03341 | T45_02996 | T45_03341 | T45_02996 | Hypothetical protein. | cysteinyl-tRNA synthetase. | 0.746 |
T45_03341 | T45_07181 | T45_03341 | T45_07181 | Hypothetical protein. | Hypothetical protein. | 0.629 |
T45_03341 | cwsA | T45_03341 | T45_04380 | Hypothetical protein. | Cell wall synthesis protein CwsA. | 0.546 |
T45_03341 | surA | T45_03341 | T45_02503 | Hypothetical protein. | Chaperone SurA. | 0.691 |
T45_03929 | T45_02996 | T45_03929 | T45_02996 | YacP-like NYN domain protein. | cysteinyl-tRNA synthetase. | 0.779 |
T45_07181 | T45_00743 | T45_07181 | T45_00743 | Hypothetical protein. | Hypothetical protein. | 0.721 |
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