Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lodB_1Putative FAD-dependent oxidoreductase LodB. (482 aa)    
Predicted Functional Partners:
lodA
L-lysine 6-oxidase.
 
     0.968
dhbF_8
Dimodular nonribosomal peptide synthase.
 
  
 0.902
cmdD_1
Chondramide synthase cmdD.
 
  
 0.846
txtB
Thaxtomin synthase B.
 
  
 0.827
txtA
Thaxtomin synthase A.
 
  
 0.826
lgrD_2
Linear gramicidin synthase subunit D.
 
  
 0.816
puuB_1
Gamma-glutamylputrescine oxidoreductase.
  
 
 0.702
dhbF_5
Dimodular nonribosomal peptide synthase.
 
  
 0.695
lgrB
Linear gramicidin synthase subunit B.
 
  
 0.666
etfB_1
Electron transfer flavoprotein subunit beta.
  
 
 0.662
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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