STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03029Hypothetical protein. (160 aa)    
Predicted Functional Partners:
T45_03033
Putative polyketide cyclase.
     0.965
tcmI_1
Tetracenomycin polyketide synthesis protein.
 
     0.921
T45_03031
Actinorhodin polyketide putative beta-ketoacyl; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.879
epsL
Putative sugar transferase EpsL.
  
 
 0.856
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
 
 0.856
T45_03030
Actinorhodin polyketide putative beta-ketoacyl; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
     0.855
T45_03032
Actinorhodin polyketide synthase acyl carrier.
       0.833
T45_06436
Putative polyketide cyclase.
     0.827
fruA
PTS system fructose-specific EIIABC component.
     
 0.819
tcmI_2
Tetracenomycin polyketide synthesis protein.
 
     0.806
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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