STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
estB_2Extracellular esterase EstB precursor. (228 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.825
T45_03043
Hypothetical protein.
       0.752
lgrD_2
Linear gramicidin synthase subunit D.
    
 0.682
ytpA
Phospholipase YtpA.
     
 0.681
ubiB
Putative protein kinase UbiB.
 
 
   0.666
T45_05026
Putative diacylglycerol; Belongs to the long-chain O-acyltransferase family.
  
  
  0.655
T45_04829
Putative lipid kinase.
     
 0.636
rplC
50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.617
rpmA
50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.607
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.607
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (20%) [HD]