STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tap_6Tripeptidyl aminopeptidase precursor. (531 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 0.902
cmdD_1
Chondramide synthase cmdD.
    
 0.703
lgrD_2
Linear gramicidin synthase subunit D.
   
 0.698
rbsA_6
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
    
  0.647
pks2
Phthioceranic/hydroxyphthioceranic acid.
  
 0.638
txtB
Thaxtomin synthase B.
   
 0.626
txtA
Thaxtomin synthase A.
   
 0.626
ppsE_1
Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.
  
 0.608
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.603
accA
Acetyl-coenzyme A carboxylase carboxyl.
    
 0.590
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.