Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lytRSensory transduction protein LytR. (422 aa)    
Predicted Functional Partners:
yehU
Sensor histidine kinase YehU.
 
 0.996
T45_03071
Hypothetical protein.
 
     0.959
barA_2
Signal transduction histidine-protein kinase.
    
 0.922
actP_1
Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.919
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
    
 0.901
rocD
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.725
T45_03069
Amidinotransferase.
       0.725
rsbP_1
Phosphoserine phosphatase RsbP.
    
 0.703
dcuS_2
Sensor histidine kinase DcuS.
 
  
 0.668
dcuS_1
Sensor histidine kinase DcuS.
 
  
 0.667
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.