Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
yehUSensor histidine kinase YehU. (404 aa)    
Predicted Functional Partners:
lytR
Sensory transduction protein LytR.
 
 0.996
T45_03071
Hypothetical protein.
 
     0.959
actP_1
Cation/acetate symporter ActP; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.954
rocD
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.694
T45_08593
Hypothetical protein.
  
 
 0.674
barA_2
Signal transduction histidine-protein kinase.
  
  
 0.621
T45_03069
Amidinotransferase.
     
 0.495
idiA
Iron deficiency-induced protein A precursor.
    
  0.426
T45_03868
Hypothetical protein.
    
  0.426
T45_04532
Hypothetical protein.
    
  0.426
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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