STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
puuR_2HTH-type transcriptional regulator PuuR. (202 aa)    
Predicted Functional Partners:
trxB_2
Thioredoxin reductase.
 
     0.843
qorA_1
Quinone oxidoreductase 1.
       0.745
acdA_6
acyl-CoA dehydrogenase.
       0.576
mmgC_7
acyl-CoA dehydrogenase.
       0.546
rppH
RNA pyrophosphohydrolase.
       0.519
lig
Putative DNA ligase-like protein/MT0965; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
       0.519
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
  0.491
fumA
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.480
gabD1
Succinate-semialdehyde dehydrogenase [NADP(+)].
  
    0.472
viuB_1
Vibriobactin utilization protein ViuB.
  
     0.440
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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