STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03096Hypothetical protein. (411 aa)    
Predicted Functional Partners:
T45_03097
Hypothetical protein.
       0.685
lytC
N-acetylmuramoyl-L-alanine amidase LytC.
     
  0.587
gltB_1
Glutamate synthase [NADPH] large chain.
       0.538
T45_00641
Putative peptidoglycan binding domain protein.
   
 
  0.487
bmr3_7
Multidrug resistance protein 3; Belongs to the major facilitator superfamily.
     
  0.482
bmr3_12
Multidrug resistance protein 3.
     
  0.482
blaI_1
Transcriptional regulator BlaI.
     
 0.464
blaI_2
Transcriptional regulator BlaI.
     
 0.464
blaI_3
Transcriptional regulator BlaI.
     
 0.464
blaI_4
Transcriptional regulator BlaI.
     
 0.464
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.