Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccpA_6Catabolite control protein A. (342 aa)    
Predicted Functional Partners:
T45_03114
Maltose ABC transporter periplasmic protein.
 
     0.817
galR_2
HTH-type transcriptional regulator GalR.
  
     0.741
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.703
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 
 0.600
lgrD_2
Linear gramicidin synthase subunit D.
    
   0.597
hypBA1_1
Non-reducing end beta-L-arabinofuranosidase.
 
     0.595
ptsH
Phosphocarrier protein HPr.
   
 
 0.577
hypBA2
beta-L-arabinobiosidase precursor.
 
     0.562
lacF_12
Lactose transport system permease protein LacF.
 
     0.557
sugB_4
Trehalose transport system permease protein.
 
     0.543
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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