Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtsAMetal ABC transporter substrate-binding. (311 aa)    
Predicted Functional Partners:
znuC_3
Zinc import ATP-binding protein ZnuC.
 
 
 0.997
znuB_2
High-affinity zinc uptake system membrane protein ZnuB.
 
 
 0.995
znuC_1
High-affinity zinc uptake system ATP-binding protein.
  
 
 0.928
znuB_1
High-affinity zinc uptake system membrane protein ZnuB.
  
 
 0.876
T45_03487
Hypothetical protein.
  
 
 0.868
rpmB_2
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.733
yciC_3
Putative metal chaperone YciC.
  
  
 0.681
ideR
Iron-dependent repressor IdeR.
  
 
 0.664
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.630
yciC_1
Putative metal chaperone YciC.
  
  
 0.622
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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