Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03141Restriction endonuclease. (254 aa)    
Predicted Functional Partners:
T45_04249
Transcriptional regulator NarL.
   
    0.732
T45_01443
Putative peptidoglycan binding domain protein.
  
     0.679
fdnH
Formate dehydrogenase, nitrate-inducible.
   
    0.676
T45_03052
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.638
T45_04198
Hypothetical protein.
  
     0.591
T45_03142
Hypothetical protein.
       0.572
T45_02580
Hypothetical protein.
  
     0.521
T45_07356
Hypothetical protein.
  
     0.464
T45_01411
Sensory histidine kinase AtoS.
  
     0.423
T45_03140
Hypothetical protein.
 
     0.407
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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