STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fucUL-fucose mutarotase; Belongs to the RbsD / FucU family. (198 aa)    
Predicted Functional Partners:
kdgK_4
2-dehydro-3-deoxygluconokinase.
       0.873
eda_2
Putative KHG/KDPG aldolase.
       0.873
kduD_2
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase.
       0.793
yjmD_2
Putative zinc-type alcohol dehydrogenase-like.
       0.791
rhaB
Rhamnulokinase.
 
 
 0.651
fdh_2
D-threo-aldose 1-dehydrogenase.
 
     0.643
T45_08466
Amidohydrolase.
 
     0.629
T45_03167
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.604
lutR_4
HTH-type transcriptional regulator LutR.
       0.558
T45_04172
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
     0.511
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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