idiA protein (Streptomyces turgidiscabies) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

idiA

Iron deficiency-induced protein A precursor. (395 aa)

Predicted Functional Partners:

cysW

0.953

ydcV

0.819

sugC

0.792

T45_00226

0.766

T45_06268

0.766

T45_05148

0.744

cysA_3

0.720

potA_1

0.720

potA_2

0.720

cysA_4

0.720

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_00226	T45_06268	T45_00226	T45_06268	Efem/EfeO family lipoprotein precursor.	Efem/EfeO family lipoprotein precursor.	0.982
T45_00226	idiA	T45_00226	T45_03212	Efem/EfeO family lipoprotein precursor.	Iron deficiency-induced protein A precursor.	0.766
T45_05148	idiA	T45_05148	T45_03212	Hypothetical protein.	Iron deficiency-induced protein A precursor.	0.744
T45_06268	T45_00226	T45_06268	T45_00226	Efem/EfeO family lipoprotein precursor.	Efem/EfeO family lipoprotein precursor.	0.982
T45_06268	idiA	T45_06268	T45_03212	Efem/EfeO family lipoprotein precursor.	Iron deficiency-induced protein A precursor.	0.766
cysA_3	cysW	T45_05681	T45_08036	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Sulfate transport system permease protein CysW.	0.811
cysA_3	idiA	T45_05681	T45_03212	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Iron deficiency-induced protein A precursor.	0.720
cysA_3	sugC	T45_05681	T45_06084	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.719
cysA_3	ydcV	T45_05681	T45_08058	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Inner membrane ABC transporter permease protein.	0.917
cysA_4	cysW	T45_08189	T45_08036	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Sulfate transport system permease protein CysW.	0.842
cysA_4	idiA	T45_08189	T45_03212	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Iron deficiency-induced protein A precursor.	0.720
cysA_4	potA_1	T45_08189	T45_08037	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine import ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.436
cysA_4	potA_2	T45_08189	T45_08056	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine import ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.417
cysA_4	sugC	T45_08189	T45_06084	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.	0.703
cysA_4	ydcV	T45_08189	T45_08058	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	Inner membrane ABC transporter permease protein.	0.981
cysW	cysA_3	T45_08036	T45_05681	Sulfate transport system permease protein CysW.	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	0.811
cysW	cysA_4	T45_08036	T45_08189	Sulfate transport system permease protein CysW.	Sulfate/thiosulfate import ATP-binding protein; Belongs to the ABC transporter superfamily.	0.842
cysW	idiA	T45_08036	T45_03212	Sulfate transport system permease protein CysW.	Iron deficiency-induced protein A precursor.	0.953
cysW	potA_1	T45_08036	T45_08037	Sulfate transport system permease protein CysW.	Spermidine/putrescine import ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.996
cysW	potA_2	T45_08036	T45_08056	Sulfate transport system permease protein CysW.	Spermidine/putrescine import ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.840