Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylA_1Xylose isomerase; Belongs to the xylose isomerase family. (388 aa)    
Predicted Functional Partners:
xylB_2
Xylulose kinase.
 
 
 0.998
xylB_1
Xylulose kinase; Belongs to the FGGY kinase family.
 
 
 0.972
fruA
PTS system fructose-specific EIIABC component.
     
 0.936
xylB_4
Xylulose kinase; Belongs to the FGGY kinase family.
  
 
 0.927
nagC_7
N-acetylglucosamine repressor.
 
  
 0.892
abfA
Intracellular.
 
  
 0.877
sacC
Levanase precursor.
     
 0.873
glkA_1
Glucokinase.
    
 0.860
glkA_2
Glucokinase.
    
 0.860
glkA_3
Glucokinase.
    
 0.860
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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