Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ubiE_2Demethylmenaquinone methyltransferase. (202 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
    
 0.832
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
     
 0.740
T45_03247
Hypothetical protein.
       0.738
T45_03251
Roadblock/LC7 domain protein.
       0.695
T45_03252
Hypothetical protein.
       0.671
T45_03246
Hypothetical protein.
       0.661
lgrD_2
Linear gramicidin synthase subunit D.
     
 0.632
T45_03253
Hypothetical protein.
       0.628
lgrB
Linear gramicidin synthase subunit B.
     
 0.607
txtB
Thaxtomin synthase B.
     
 0.607
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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