STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03250Sensor protein BasS/PmrB. (844 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
   
 0.980
T45_03251
Roadblock/LC7 domain protein.
 
     0.951
T45_03252
Hypothetical protein.
 
     0.936
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.934
T45_03253
Hypothetical protein.
 
     0.862
T45_08128
Hypothetical protein.
 
     0.793
T45_08129
Roadblock/LC7 domain protein.
 
     0.793
T45_07917
Roadblock/LC7 domain protein.
 
     0.790
T45_02726
Roadblock/LC7 domain protein.
 
     0.789
T45_03255
Roadblock/LC7 domain protein.
 
     0.784
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.