yheI_1 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yheI_1

Putative multidrug resistance ABC transporter. (636 aa)

Predicted Functional Partners:

T45_03262

0.854

T45_04939

0.683

pks2

0.663

ppsE_1

0.653

cydD

0.652

dhbF_8

0.644

acuC

0.640

lagD

0.619

apxIB

0.619

pksN

0.588

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_03262	acuC	T45_03262	T45_06550	Putative ABC transporter ATP-binding protein.	Acetoin utilization protein AcuC.	0.640
T45_03262	apxIB	T45_03262	T45_03793	Putative ABC transporter ATP-binding protein.	Toxin RTX-I translocation ATP-binding protein.	0.619
T45_03262	cydD	T45_03262	T45_01347	Putative ABC transporter ATP-binding protein.	ATP-binding/permease protein CydD.	0.652
T45_03262	dhbF_8	T45_03262	T45_05484	Putative ABC transporter ATP-binding protein.	Dimodular nonribosomal peptide synthase.	0.644
T45_03262	lagD	T45_03262	T45_03792	Putative ABC transporter ATP-binding protein.	lactococcin-G-processing and transport.	0.619
T45_03262	pks2	T45_03262	T45_01967	Putative ABC transporter ATP-binding protein.	Phthioceranic/hydroxyphthioceranic acid.	0.663
T45_03262	pksN	T45_03262	T45_03157	Putative ABC transporter ATP-binding protein.	Polyketide synthase PksN; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.588
T45_03262	ppsE_1	T45_03262	T45_02351	Putative ABC transporter ATP-binding protein.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.653
T45_03262	yheI_1	T45_03262	T45_03263	Putative ABC transporter ATP-binding protein.	Putative multidrug resistance ABC transporter.	0.854
T45_04939	acuC	T45_04939	T45_06550	Putative multidrug export ATP-binding/permease protein.	Acetoin utilization protein AcuC.	0.640
T45_04939	apxIB	T45_04939	T45_03793	Putative multidrug export ATP-binding/permease protein.	Toxin RTX-I translocation ATP-binding protein.	0.619
T45_04939	cydD	T45_04939	T45_01347	Putative multidrug export ATP-binding/permease protein.	ATP-binding/permease protein CydD.	0.652
T45_04939	dhbF_8	T45_04939	T45_05484	Putative multidrug export ATP-binding/permease protein.	Dimodular nonribosomal peptide synthase.	0.644
T45_04939	lagD	T45_04939	T45_03792	Putative multidrug export ATP-binding/permease protein.	lactococcin-G-processing and transport.	0.619
T45_04939	pks2	T45_04939	T45_01967	Putative multidrug export ATP-binding/permease protein.	Phthioceranic/hydroxyphthioceranic acid.	0.717
T45_04939	pksN	T45_04939	T45_03157	Putative multidrug export ATP-binding/permease protein.	Polyketide synthase PksN; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.588
T45_04939	ppsE_1	T45_04939	T45_02351	Putative multidrug export ATP-binding/permease protein.	Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsE.	0.653
T45_04939	yheI_1	T45_04939	T45_03263	Putative multidrug export ATP-binding/permease protein.	Putative multidrug resistance ABC transporter.	0.683
acuC	T45_03262	T45_06550	T45_03262	Acetoin utilization protein AcuC.	Putative ABC transporter ATP-binding protein.	0.640
acuC	T45_04939	T45_06550	T45_04939	Acetoin utilization protein AcuC.	Putative multidrug export ATP-binding/permease protein.	0.640