Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
metPMethionine import system permease protein MetP. (252 aa)    
Predicted Functional Partners:
T45_03285
Membrane lipoprotein TpN32 precursor; Belongs to the nlpA lipoprotein family.
 0.999
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
T45_06401
Hypothetical protein.
 
 0.980
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
       0.657
opuCD
Glycine betaine/carnitine/choline transport system permease protein.
  
 
  0.567
opuCB_2
Glycine betaine/carnitine/choline transport system permease protein.
  
 
  0.538
opuBB
Choline transport system permease protein OpuBB.
  
 
  0.521
T45_03288
Hypothetical protein.
       0.519
T45_03289
Hypothetical protein.
       0.519
opuCB_1
Glycine betaine/carnitine/choline transport system permease protein.
  
 
  0.496
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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