Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
clcD_1Carboxymethylenebutenolidase. (262 aa)    
Predicted Functional Partners:
tfdF
Maleylacetate reductase.
  
 
 0.893
clcD_2
Carboxymethylenebutenolidase.
  
  
 
0.830
T45_02898
L-Ala-D/L-Glu epimerase.
     
  0.772
npcC
Hydroxyquinol 1,2-dioxygenase.
   
 
 0.750
T45_03321
Hypothetical protein.
       0.568
ndkA
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
   0.534
catA_1
Catechol 1,2-dioxygenase.
   
 
 0.485
T45_00171
Dioxygenase.
   
 
 0.485
T45_01203
Dioxygenase.
   
 
 0.485
T45_01204
Dioxygenase.
   
 
 0.485
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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