STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lldR_1Putative L-lactate dehydrogenase operon regulatory protein. (243 aa)    
Predicted Functional Partners:
lvr_1
Levodione reductase.
 
    0.891
glnA_1
Putative glutamine synthetase 2.
 
    0.884
T45_03347
Putative glutamine amidotransferase.
 
   
 0.832
feaB_1
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.809
lutR_5
HTH-type transcriptional regulator LutR.
  
     0.730
lutR_2
HTH-type transcriptional regulator LutR.
  
     0.674
ydfH_6
Putative HTH-type transcriptional regulator.
  
    0.673
mcbR_4
HTH-type transcriptional regulator McbR.
  
    0.655
lutR_11
HTH-type transcriptional regulator LutR.
  
    0.653
mcbR_1
HTH-type transcriptional regulator McbR.
  
    0.595
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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