STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysLHTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family. (307 aa)    
Predicted Functional Partners:
tdt
C4-dicarboxylate transporter/malic acid transport protein.
 
     0.753
hcaR_2
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.657
gltC_4
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.611
benM_2
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.608
gltC_8
HTH-type transcriptional regulator GltC; Belongs to the LysR transcriptional regulatory family.
  
     0.502
T45_03350
Vitamin B12-transporter protein BtuF.
       0.483
hcaR_1
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.460
T45_06698
Hypothetical protein.
       0.412
T45_03351
DNA-binding transcriptional repressor PuuR.
  
    0.406
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.