STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gbuAGlycine betaine/carnitine transport ATP-binding protein. (364 aa)    
Predicted Functional Partners:
gbuC
Glycine betaine/carnitine transport binding.
 
 0.999
opuAB_1
Glycine betaine transport system permease.
 0.999
opuAB_2
Glycine betaine transport system permease.
 0.999
opuCD
Glycine betaine/carnitine/choline transport system permease protein.
 
 
 0.705
opuCB_1
Glycine betaine/carnitine/choline transport system permease protein.
 
 
 0.697
opuCB_2
Glycine betaine/carnitine/choline transport system permease protein.
 
 
 0.658
opuBB
Choline transport system permease protein OpuBB.
 
 
 0.651
ypcP
5'-3' exonuclease.
       0.522
modB
Molybdenum transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.511
viuB_1
Vibriobactin utilization protein ViuB.
 
     0.461
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.