STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rip3Putative zinc metalloprotease Rip3. (485 aa)    
Predicted Functional Partners:
lacC_1
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.782
lacC_2
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
  
    0.782
T45_02856
Putative membrane protein/MT1774.
   
    0.777
hrp1_2
Hypoxic response protein 1.
  
    0.776
T45_03394
PD-(D/E)XK nuclease superfamily protein.
       0.749
liaR_4
Transcriptional regulatory protein LiaR.
  
    0.714
T45_05436
Hypothetical protein.
  
     0.640
T45_02846
Hypothetical protein.
   
    0.605
T45_06774
Hypothetical protein.
   
    0.605
T45_03388
Hypothetical protein.
       0.519
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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