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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03394PD-(D/E)XK nuclease superfamily protein. (295 aa)    
Predicted Functional Partners:
uvrD2
ATP-dependent DNA helicase UvrD2.
   
  0.882
liaR_4
Transcriptional regulatory protein LiaR.
       0.779
rip3
Putative zinc metalloprotease Rip3.
       0.768
uvrD
DNA helicase II; Belongs to the helicase family. UvrD subfamily.
   
  0.675
uvrD1_1
ATP-dependent DNA helicase UvrD1; Belongs to the helicase family. UvrD subfamily.
   
  0.675
uvrD1_2
ATP-dependent DNA helicase UvrD1.
   
  0.675
T45_07609
DNA-dependent helicase II.
   
  0.675
pimA
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase.
  
     0.649
T45_08398
Hypothetical protein.
  
     0.642
T45_08396
Phosphatidylinositol mannoside acyltransferase.
  
     0.600
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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