STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsA_3Ribose import ATP-binding protein RbsA. (516 aa)    
Predicted Functional Partners:
T45_03415
Branched-chain amino acid transport system; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
T45_03416
Branched-chain amino acid transport system; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
tmpC_2
Membrane lipoprotein TmpC precursor.
 
 
 0.986
ytfT_2
Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.978
T45_01536
Branched-chain amino acid transport system; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.978
tmpC_1
Membrane lipoprotein TmpC precursor.
 
 
 0.974
T45_06846
L-arabinose transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.968
T45_06845
L-arabinose transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.967
tmpC_3
Membrane lipoprotein TmpC precursor.
 
 
 0.945
udp
Uridine phosphorylase.
       0.724
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.