STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lutR_5HTH-type transcriptional regulator LutR. (223 aa)    
Predicted Functional Partners:
ydfH_4
Putative HTH-type transcriptional regulator.
  
    0.761
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
  
     0.730
csiR_1
HTH-type transcriptional repressor CsiR.
  
    0.728
ydfH_7
Putative HTH-type transcriptional regulator.
  
    0.718
ydfH_3
Putative HTH-type transcriptional regulator.
  
    0.709
mcbR_3
HTH-type transcriptional regulator McbR.
  
    0.703
lutR_10
HTH-type transcriptional regulator LutR.
  
     0.663
ydfH_1
Putative HTH-type transcriptional regulator.
  
    0.630
T45_08138
Bacterial regulatory proteins, gntR family.
  
    0.564
yurK_3
Putative HTH-type transcriptional regulator.
  
    0.527
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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