STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_03438Thermitase. (412 aa)    
Predicted Functional Partners:
spoVK_1
Stage V sporulation protein K.
 
  
 0.757
aprN_2
Subtilisin NAT precursor; Belongs to the peptidase S8 family.
  
     0.728
lieA_1
Leupeptin-inactivating enzyme 1 precursor; Belongs to the peptidase S8 family.
  
     0.687
lieA_2
Leupeptin-inactivating enzyme 1 precursor.
 
  
 0.678
T45_06617
Hypothetical protein.
   
 0.665
eccCa1_1
ESX-1 secretion system protein EccCa1.
 
 
 0.648
cpt
Carboxypeptidase T precursor.
   
 0.648
sdrE
Serine-aspartate repeat-containing protein E.
    
  0.646
eccCb1
ESX-1 secretion system protein EccCb1.
 
 
 0.633
bprV
Extracellular basic protease precursor.
  
  
0.625
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.