Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
eccB1ESX-1 secretion system protein eccB1. (525 aa)    
Predicted Functional Partners:
snm
Hypothetical protein.
 
 
 
 0.931
eccCa1_1
ESX-1 secretion system protein EccCa1.
 
 
 0.892
eccCb1
ESX-1 secretion system protein EccCb1.
 
 
 0.854
bprV
Extracellular basic protease precursor.
   
 0.750
T45_03443
Proteins of 100 residues with WXG; Belongs to the WXG100 family.
  
 
 0.720
T45_01607
Hypothetical protein.
    
   0.558
T45_03442
Proteins of 100 residues with WXG.
       0.541
spoVK_1
Stage V sporulation protein K.
 
   
 0.517
T45_03438
Thermitase.
 
 
 
 0.495
T45_03448
Hypothetical protein.
 
 
   0.485
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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