Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03448Hypothetical protein. (5622 aa)    
Predicted Functional Partners:
T45_03446
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
       0.773
T45_03447
Hypothetical protein.
       0.773
lieA_2
Leupeptin-inactivating enzyme 1 precursor.
    
 0.636
cpt
Carboxypeptidase T precursor.
   
 0.594
yxlF_5
Putative ABC transporter ATP-binding protein.
  
 
   0.583
T45_03445
Hypothetical protein.
       0.570
T45_04433
Hypothetical protein.
  
     0.492
sprT_2
Trypsin precursor.
 
 
  0.487
eccB1
ESX-1 secretion system protein eccB1.
 
 
   0.485
T45_06964
Hypothetical protein.
  
     0.479
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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