Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03456Baseplate J-like protein. (1073 aa)    
Predicted Functional Partners:
T45_03457
Gene 25-like lysozyme.
 
 
 0.990
T45_03461
Hypothetical protein.
 
 
 0.986
T45_03460
Phage late control gene D protein (GPD).
 
 
   0.985
T45_03454
Hypothetical protein.
 
     0.970
T45_03471
Phage tail sheath protein.
 
 
 0.967
T45_03459
Phage-related baseplate assembly protein.
 
   
 0.965
T45_03462
Hypothetical protein.
 
     0.946
T45_03453
Hypothetical protein.
 
     0.944
T45_06459
Phage tail sheath protein.
 
 
 0.939
T45_03464
Hypothetical protein.
 
     0.927
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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