STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftsH_2ATP-dependent zinc metalloprotease FtsH. (648 aa)    
Predicted Functional Partners:
T45_03464
Hypothetical protein.
 
     0.952
T45_03467
Hypothetical protein.
 
     0.917
T45_03462
Hypothetical protein.
 
     0.905
T45_03460
Phage late control gene D protein (GPD).
 
     0.903
T45_03461
Hypothetical protein.
 
     0.903
ybiA
Swarming motility protein YbiA.
   
 
 0.895
T45_03469
Hypothetical protein.
 
     0.891
T45_03459
Phage-related baseplate assembly protein.
 
     0.884
yrrB
TPR repeat-containing protein YrrB.
 
 
 0.882
T45_03456
Baseplate J-like protein.
 
     0.880
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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