STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnD_1L-idonate 5-dehydrogenase. (342 aa)    
Predicted Functional Partners:
gno_1
Gluconate 5-dehydrogenase.
 
 
 0.888
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.854
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
 
 
 0.806
xylA_1
Xylose isomerase; Belongs to the xylose isomerase family.
     
 0.758
korA
2-oxoglutarate oxidoreductase subunit KorA.
    
 0.739
kdgK_5
2-dehydro-3-deoxygluconokinase.
  
 
  0.663
kdgK_8
2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
  
 
  0.663
tdcB_3
L-threonine dehydratase catabolic TdcB.
   
 
 0.639
gntT_2
High-affinity gluconate transporter.
     
 0.627
mlr_1
4-methylaminobutanoate oxidase; Belongs to the GcvT family.
  
 
 0.622
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.