STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfcD_1Putative Nudix hydrolase YfcD. (201 aa)    
Predicted Functional Partners:
T45_03482
Hypothetical protein.
       0.884
yidH
Inner membrane protein YidH.
       0.874
T45_03485
Hypothetical protein.
       0.874
T45_04172
Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
 
 0.774
fdnI
Formate dehydrogenase, nitrate-inducible.
       0.648
yedY_2
Sulfoxide reductase catalytic subunit YedY.
       0.648
T45_03481
Hypothetical protein.
 
     0.564
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
     0.552
T45_03487
Hypothetical protein.
       0.550
T45_03488
Phosphotransferase enzyme family protein.
       0.550
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.