Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03494Hypothetical protein. (452 aa)    
Predicted Functional Partners:
T45_03493
Hypothetical protein.
       0.769
T45_03628
Hypothetical protein.
  
     0.728
afsR_3
Regulatory protein AfsR.
  
     0.715
T45_02823
Lanthionine synthetase C-like protein.
  
     0.700
T45_03481
Hypothetical protein.
  
     0.699
actIII_1
Putative ketoacyl reductase.
       0.680
kstR2_5
HTH-type transcriptional repressor KstR2.
       0.679
T45_00106
Putative amidase domain protein.
  
     0.657
T45_02695
Phosphotransferase enzyme family protein.
  
     0.651
pknB_6
Serine/threonine-protein kinase PknB.
  
     0.628
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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