Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_03502YiaA/B two helix domain protein. (95 aa)    
Predicted Functional Partners:
tetR_2
Tetracycline repressor protein class E.
 
     0.735
cmtR
HTH-type transcriptional regulator CmtR.
       0.654
fadR_2
Fatty acid metabolism regulator protein.
 
     0.630
T45_03506
Putative DMT superfamily transporter inner membrane protein.
       0.609
mmgC_9
acyl-CoA dehydrogenase.
       0.598
T45_00198
CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.465
T45_01711
CobQ/CobB/MinD/ParA nucleotide binding domain.
  
     0.425
T45_03946
Sensory histidine kinase UhpB.
 
     0.424
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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