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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tetR_2Tetracycline repressor protein class E. (246 aa)    
Predicted Functional Partners:
cmtR
HTH-type transcriptional regulator CmtR.
     
 0.796
T45_03502
YiaA/B two helix domain protein.
 
     0.753
T45_03506
Putative DMT superfamily transporter inner membrane protein.
       0.724
fadR_2
Fatty acid metabolism regulator protein.
       0.671
mmgC_9
acyl-CoA dehydrogenase.
       0.631
T45_03516
Hypothetical protein.
  
     0.525
T45_03608
Bacterial regulatory proteins, tetR family.
  
     0.505
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
  
  
 0.493
T45_02069
Hypothetical protein.
  
     0.468
cph2_2
Phytochrome-like protein cph2.
  
    0.448
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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