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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhF_1Formate dehydrogenase H. (751 aa)    
Predicted Functional Partners:
fdnH
Formate dehydrogenase, nitrate-inducible.
  
 0.998
T45_03036
Hypothetical protein.
 
 0.978
qcrC
Menaquinol-cytochrome c reductase cytochrome c subunit.
  
 0.973
gltB_1
Glutamate synthase [NADPH] large chain.
  
 0.936
fdnI
Formate dehydrogenase, nitrate-inducible.
  
 0.911
tufA
Elongation factor Tu.
   
 
 0.903
tuf_1
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.903
T45_07492
Hypothetical protein.
   
 
 0.903
tuf_2
Elongation factor Tu.
   
 
 0.903
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.901
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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